Skip to content

VAMP-seq with replicates #45

@afrubin

Description

@afrubin

When performing an analysis of a VAMP-seq dataset with multiple replicates, I had to:

  • Create Expression plugins to drop the other replicate counts for each replicate
  • Run the VAMP-seq plugin on each of these new single-replicate count data frames
  • Merge the replicate scores
  • Rename the score columns

This was a bit clumsy, so adding a field where count columns can be assigned to replicates in addition to the weights field would be a nice convenience.

Metadata

Metadata

Assignees

No one assigned

    Labels

    workflowRelated to a specific workflow or analysis

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions