diff --git a/.github/workflows/extralit.yml b/.github/workflows/extralit.yml index e02ed60e3..7d6922e21 100644 --- a/.github/workflows/extralit.yml +++ b/.github/workflows/extralit.yml @@ -46,7 +46,7 @@ jobs: strategy: fail-fast: true matrix: - python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] + python-version: ["3.11", "3.12", "3.13"] steps: - uses: actions/checkout@v4 - name: Install uv @@ -127,7 +127,7 @@ jobs: - name: Upload artifact uses: actions/upload-artifact@v4 # Upload the package to be used in the next jobs only once - if: ${{ matrix.python-version == '3.9' }} + if: ${{ matrix.python-version == '3.11' }} with: name: extralit path: extralit/dist @@ -182,7 +182,7 @@ jobs: uses: astral-sh/setup-uv@d4b2f3b6ecc6e67c4457f6d3e41ec42d3d0fcb86 with: pyproject-file: "extralit/pyproject.toml" - python-version: "3.9" + python-version: "3.11" - name: Read package info run: | diff --git a/extralit-frontend/components/features/import/file-upload/useImportFileUploadViewModel.spec.ts b/extralit-frontend/components/features/import/file-upload/useImportFileUploadViewModel.spec.ts index e69de29bb..21f01e1f9 100644 --- a/extralit-frontend/components/features/import/file-upload/useImportFileUploadViewModel.spec.ts +++ b/extralit-frontend/components/features/import/file-upload/useImportFileUploadViewModel.spec.ts @@ -0,0 +1,5 @@ +describe("useImportFileUploadViewModel", () => { + it("should be defined", () => { + expect(true).toBe(true); + }); +}); diff --git a/extralit-frontend/components/features/user-settings/CopilotConnect.vue b/extralit-frontend/components/features/user-settings/CopilotConnect.vue new file mode 100644 index 000000000..41a19973e --- /dev/null +++ b/extralit-frontend/components/features/user-settings/CopilotConnect.vue @@ -0,0 +1,187 @@ + + + + + diff --git a/extralit-frontend/components/features/user-settings/UserSettingsContent.vue b/extralit-frontend/components/features/user-settings/UserSettingsContent.vue index 9b3e47395..3a63099aa 100644 --- a/extralit-frontend/components/features/user-settings/UserSettingsContent.vue +++ b/extralit-frontend/components/features/user-settings/UserSettingsContent.vue @@ -46,6 +46,10 @@
+
+

GitHub Copilot

+ +
diff --git a/extralit-frontend/components/features/user-settings/useCopilotConnectViewModel.ts b/extralit-frontend/components/features/user-settings/useCopilotConnectViewModel.ts new file mode 100644 index 000000000..ba69d64e3 --- /dev/null +++ b/extralit-frontend/components/features/user-settings/useCopilotConnectViewModel.ts @@ -0,0 +1,38 @@ +import { useFetch, onBeforeUnmount } from "@nuxtjs/composition-api"; +import { useResolve } from "ts-injecty"; +import { computed } from "vue-demi"; +import { GitHubAuthUseCase } from "~/v1/domain/usecases/github-auth-use-case"; +import { useGitHubAuth } from "~/v1/infrastructure/storage/GitHubAuthStorage"; + +export const useCopilotConnectViewModel = () => { + const gitHubAuthUseCase = useResolve(GitHubAuthUseCase); + const store = useGitHubAuth(); + + const isAuthenticated = computed(() => store.state.isAuthenticated); + const isPending = computed(() => store.state.isPending); + const userCode = computed(() => store.state.userCode); + const verificationUri = computed(() => store.state.verificationUri); + const errorMessage = computed(() => store.state.errorMessage); + + useFetch(async () => { + await gitHubAuthUseCase.checkStatus(); + }); + + const connectCopilot = async () => { + if (isPending.value) return; + await gitHubAuthUseCase.initiateLogin(); + }; + + onBeforeUnmount(() => { + gitHubAuthUseCase.clearPolling(); + }); + + return { + isAuthenticated, + isPending, + userCode, + verificationUri, + errorMessage, + connectCopilot, + }; +}; diff --git a/extralit-frontend/v1/di/di.ts b/extralit-frontend/v1/di/di.ts index 6a819c978..3ed6f8e3a 100644 --- a/extralit-frontend/v1/di/di.ts +++ b/extralit-frontend/v1/di/di.ts @@ -25,6 +25,7 @@ import { UserRepository, HubRepository, JobRepository, + GitHubAuthRepository, } from "@/v1/infrastructure/repositories"; import { useLocalStorage, useRole, useRoutes } from "@/v1/infrastructure/services"; @@ -35,6 +36,7 @@ import { useDatasets } from "@/v1/infrastructure/storage/DatasetsStorage"; import { useMetrics } from "@/v1/infrastructure/storage/MetricsStorage"; import { useDatasetSetting } from "@/v1/infrastructure/storage/DatasetSettingStorage"; import { useWorkspaces } from "@/v1/infrastructure/storage/WorkspaceStorage"; +import { useGitHubAuth } from "@/v1/infrastructure/storage/GitHubAuthStorage"; import { GetHfDatasetCreationUseCase } from "~/v1/domain/usecases/get-hf-dataset-creation-use-case"; import { GetDatasetsUseCase } from "@/v1/domain/usecases/get-datasets-use-case"; @@ -81,6 +83,7 @@ import { UpdateDatasetUseCase } from "@/v1/domain/usecases/update-dataset-use-ca import { GetFirstRecordFromHub } from "@/v1/domain/usecases/get-first-record-from-hub"; import { ExportDatasetToHubUseCase } from "@/v1/domain/usecases/export-dataset-to-hub-use-case"; import { AuthLoginUseCase } from "@/v1/domain/usecases/auth-login-use-case"; +import { GitHubAuthUseCase } from "@/v1/domain/usecases/github-auth-use-case"; import { FileParsingService } from "~/v1/domain/services/FileParsingService"; import { PdfMatchingService } from "@/v1/domain/services/FileMatchingService"; @@ -217,6 +220,9 @@ export const loadDependencyContainer = (context: Context) => { register(ExportDatasetToHubUseCase).withDependencies(DatasetRepository, useLocalStorage).build(), + register(GitHubAuthRepository).withDependency(useAxios).build(), + register(GitHubAuthUseCase).withDependencies(GitHubAuthRepository, useGitHubAuth).build(), + register(FileParsingService).build(), register(PdfMatchingService).build(), ]; diff --git a/extralit-frontend/v1/domain/usecases/github-auth-use-case.ts b/extralit-frontend/v1/domain/usecases/github-auth-use-case.ts new file mode 100644 index 000000000..27e9983f7 --- /dev/null +++ b/extralit-frontend/v1/domain/usecases/github-auth-use-case.ts @@ -0,0 +1,112 @@ +import { GitHubAuthRepository } from "@/v1/infrastructure/repositories/GitHubAuthRepository"; +import type { ImplicitStorage } from "@/v1/store/create"; + +const MIN_POLL_INTERVAL_MS = 5_000; +const MAX_POLL_INTERVAL_MS = 30_000; + +interface GitHubAuthState { + isAuthenticated: boolean; + isPending: boolean; + userCode: string | null; + verificationUri: string | null; + errorMessage: string | null; +} + +type GitHubAuthStore = { state: GitHubAuthState } & ImplicitStorage; + +export class GitHubAuthUseCase { + private pollingTimer: ReturnType | null = null; + private stopped = false; + + constructor( + private readonly repository: GitHubAuthRepository, + private readonly store: GitHubAuthStore + ) {} + + async checkStatus(): Promise { + try { + const { authenticated } = await this.repository.getStatus(); + this.saveTerminalState(authenticated); + } catch (error) { + console.error("GitHub auth status check failed:", error); + } + } + + async initiateLogin(): Promise { + this.stopped = false; + + const response = await this.repository.initiateLogin(); + + this.store.save({ + isAuthenticated: false, + isPending: true, + userCode: response.user_code, + verificationUri: response.verification_uri, + errorMessage: null, + }); + + this.startPolling(response.interval); + } + + clearPolling(): void { + this.stopped = true; + if (this.pollingTimer) { + clearTimeout(this.pollingTimer); + this.pollingTimer = null; + } + } + + private saveTerminalState( + isAuthenticated: boolean, + errorMessage: string | null = null + ): void { + this.clearPolling(); + this.store.save({ + isAuthenticated, + isPending: false, + userCode: null, + verificationUri: null, + errorMessage, + }); + } + + private startPolling(intervalSeconds: number): void { + this.clearPolling(); + this.stopped = false; + + let pollIntervalMs = Math.max(intervalSeconds * 1000, MIN_POLL_INTERVAL_MS); + + const poll = async () => { + try { + const { status, message } = await this.repository.pollToken(); + + if (this.stopped) return; + + if (status === "authorized") { + this.saveTerminalState(true); + return; + } else if (status === "error") { + this.saveTerminalState( + false, + message || "Authorization failed or expired. Please try again." + ); + return; + } else if (status === "slow_down") { + // RFC 8628: add 5 seconds to the polling interval permanently + pollIntervalMs = Math.min(pollIntervalMs + MIN_POLL_INTERVAL_MS, MAX_POLL_INTERVAL_MS); + } + + if (!this.stopped) { + this.pollingTimer = setTimeout(poll, pollIntervalMs); + } + } catch (error) { + console.error("GitHub auth polling error:", error); + if (!this.stopped) { + this.saveTerminalState(false, "Connection error. Please try again."); + } + } + }; + + this.pollingTimer = setTimeout(poll, pollIntervalMs); + } +} diff --git a/extralit-frontend/v1/infrastructure/repositories/GitHubAuthRepository.ts b/extralit-frontend/v1/infrastructure/repositories/GitHubAuthRepository.ts new file mode 100644 index 000000000..98162a657 --- /dev/null +++ b/extralit-frontend/v1/infrastructure/repositories/GitHubAuthRepository.ts @@ -0,0 +1,44 @@ +import { type NuxtAxiosInstance } from "@nuxtjs/axios"; + +interface AuthStatusResponse { + authenticated: boolean; + username: string; +} + +interface DeviceFlowResponse { + user_code: string; + verification_uri: string; + expires_in: number; + interval: number; +} + +interface PollTokenResponse { + status: "pending" | "slow_down" | "authorized" | "error"; + message?: string; +} + +export class GitHubAuthRepository { + // Take the standard authenticated Axios instance directly + constructor(private readonly axios: NuxtAxiosInstance) { } + + async getStatus(): Promise { + const { data } = await this.axios.get( + "v1/auth/github/status" + ); + return data; + } + + async initiateLogin(): Promise { + const { data } = await this.axios.post( + "v1/auth/github/login" + ); + return data; + } + + async pollToken(): Promise { + const { data } = await this.axios.post( + "v1/auth/github/poll" + ); + return data; + } +} \ No newline at end of file diff --git a/extralit-frontend/v1/infrastructure/repositories/index.ts b/extralit-frontend/v1/infrastructure/repositories/index.ts index cb8fad438..320194c38 100644 --- a/extralit-frontend/v1/infrastructure/repositories/index.ts +++ b/extralit-frontend/v1/infrastructure/repositories/index.ts @@ -16,3 +16,4 @@ export * from "./UserRepository"; export * from "./VectorRepository"; export * from "./DocumentRepository"; export * from "./WorkspaceRepository"; +export * from "./GitHubAuthRepository"; diff --git a/extralit-frontend/v1/infrastructure/storage/GitHubAuthStorage.ts b/extralit-frontend/v1/infrastructure/storage/GitHubAuthStorage.ts new file mode 100644 index 000000000..e320308fe --- /dev/null +++ b/extralit-frontend/v1/infrastructure/storage/GitHubAuthStorage.ts @@ -0,0 +1,15 @@ +import { useStoreFor } from "@/v1/store/create"; + +class GitHubAuthState { + constructor( + public readonly isAuthenticated: boolean = false, + public readonly isPending: boolean = false, + public readonly userCode: string | null = null, + public readonly verificationUri: string | null = null, + public readonly errorMessage: string | null = null + ) {} +} + +const useStoreForGitHubAuth = useStoreFor(GitHubAuthState); + +export const useGitHubAuth = () => useStoreForGitHubAuth(); diff --git a/extralit-server/pyproject.toml b/extralit-server/pyproject.toml index c5ca6b3cf..f5312b2f7 100644 --- a/extralit-server/pyproject.toml +++ b/extralit-server/pyproject.toml @@ -3,7 +3,7 @@ name = "extralit-server" dynamic = ["version"] description = "Open-source tool for accurate & fast scientific literature data extraction with LLM and human-in-the-loop." readme = "README.md" -requires-python = ">=3.10" +requires-python = ">=3.11,<3.14" license = { text = "Apache-2.0" } keywords = [ "literature-review", diff --git a/extralit-server/src/extralit_server/api/handlers/v1/chat.py b/extralit-server/src/extralit_server/api/handlers/v1/chat.py index 569edaeae..c8dccaba1 100644 --- a/extralit-server/src/extralit_server/api/handlers/v1/chat.py +++ b/extralit-server/src/extralit_server/api/handlers/v1/chat.py @@ -39,6 +39,13 @@ router = APIRouter(tags=["chat"]) +COPILOT_HEADERS = { + "Editor-Version": "vscode/1.96.2", + "Editor-Plugin-Version": "copilot/1.256.0", + "User-Agent": "GithubCopilot/1.256.0", + "Copilot-Integration-Id": "vscode-chat", +} + class ChatMessage(BaseModel): """A single chat message.""" @@ -256,6 +263,8 @@ async def stream_response(): messages=messages, stream=request.stream, api_key=token_data["access_token"], + extra_headers=COPILOT_HEADERS, + custom_llm_provider="github", ) if request.stream: diff --git a/extralit-server/src/extralit_server/jobs/preload.py b/extralit-server/src/extralit_server/jobs/preload.py index 76ef65204..336950a27 100644 --- a/extralit-server/src/extralit_server/jobs/preload.py +++ b/extralit-server/src/extralit_server/jobs/preload.py @@ -31,7 +31,7 @@ document_jobs, hub_jobs, import_jobs, - # ocr_jobs, + ocr_jobs, webhook_jobs, ) from extralit_server.models.database import Dataset, Document, Record, User, Workspace # noqa: F401 diff --git a/extralit-server/uv.lock b/extralit-server/uv.lock index f55dc96d5..e8339b3e3 100644 --- a/extralit-server/uv.lock +++ b/extralit-server/uv.lock @@ -1,30 +1,22 @@ version = 1 revision = 3 -requires-python = ">=3.10" +requires-python = ">=3.11, <3.14" resolution-markers = [ - "python_full_version >= '3.14' and sys_platform == 'win32'", - "python_full_version >= '3.14' and sys_platform == 'emscripten'", - "python_full_version >= '3.14' and sys_platform == 'darwin'", - "python_full_version >= '3.14' and platform_machine == 'aarch64' and sys_platform == 'linux'", - "(python_full_version >= '3.14' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version >= '3.14' and sys_platform != 'darwin' and sys_platform != 'emscripten' and sys_platform != 'linux' and sys_platform != 'win32')", - "python_full_version == '3.13.*' and sys_platform == 'win32'", - "python_full_version == '3.13.*' and sys_platform == 'emscripten'", - "python_full_version == '3.13.*' and sys_platform == 'darwin'", - "python_full_version == '3.13.*' and platform_machine == 'aarch64' and sys_platform == 'linux'", - "(python_full_version == '3.13.*' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version == '3.13.*' and sys_platform != 'darwin' and sys_platform != 'emscripten' and sys_platform != 'linux' and sys_platform != 'win32')", + "python_full_version >= '3.13' and sys_platform == 'darwin'", "python_full_version == '3.12.*' and sys_platform == 'darwin'", + "python_full_version >= '3.13' and platform_machine == 'aarch64' and sys_platform == 'linux'", "python_full_version == '3.12.*' and platform_machine == 'aarch64' and sys_platform == 'linux'", + "python_full_version >= '3.13' and sys_platform == 'win32'", + "python_full_version >= '3.13' and sys_platform == 'emscripten'", + "(python_full_version >= '3.13' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version >= '3.13' and sys_platform != 'darwin' and sys_platform != 'emscripten' and sys_platform != 'linux' and sys_platform != 'win32')", "python_full_version == '3.12.*' and sys_platform == 'win32'", "python_full_version == '3.12.*' and sys_platform == 'emscripten'", "(python_full_version == '3.12.*' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version == '3.12.*' and sys_platform != 'darwin' and sys_platform != 'emscripten' and sys_platform != 'linux' and sys_platform != 'win32')", - "python_full_version == '3.11.*' and sys_platform == 'darwin'", - "python_full_version == '3.11.*' and platform_machine == 'aarch64' and sys_platform == 'linux'", - "python_full_version == '3.11.*' and sys_platform == 'win32'", - "python_full_version == '3.11.*' and sys_platform == 'emscripten'", - "(python_full_version == '3.11.*' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version == '3.11.*' and sys_platform != 'darwin' and sys_platform != 'emscripten' and sys_platform != 'linux' and sys_platform != 'win32')", - "python_full_version < '3.11' and sys_platform == 'darwin'", - "python_full_version < '3.11' and platform_machine == 'aarch64' and sys_platform == 'linux'", - "(python_full_version < '3.11' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version < '3.11' and sys_platform != 'darwin' and sys_platform != 'linux')", + "python_full_version < '3.12' and sys_platform == 'darwin'", + "python_full_version < '3.12' and platform_machine == 'aarch64' and sys_platform == 'linux'", + "python_full_version < '3.12' and sys_platform == 'win32'", + "python_full_version < '3.12' and sys_platform == 'emscripten'", + "(python_full_version < '3.12' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version < '3.12' and sys_platform != 'darwin' and sys_platform != 'emscripten' and sys_platform != 'linux' and sys_platform != 'win32')", ] [[package]] @@ -88,7 +80,6 @@ source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "aiohappyeyeballs" }, { name = "aiosignal" }, - 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{ name = "Extralit Labs", email = "extralit.contact@gmail.com" }, -] -maintainers = [ - { name = "Extralit Labs", email = "extralit.contact@gmail.com" }, -] -requires-python = ">=3.9.2, <3.14" +authors = [{ name = "Extralit Labs", email = "extralit.contact@gmail.com" }] +maintainers = [{ name = "Extralit Labs", email = "extralit.contact@gmail.com" }] +# requires-python = ">=3.9.2, <3.14" +requires-python = ">=3.11,<3.14" readme = "README.md" license = { text = "Apache 2.0" } @@ -19,7 +16,7 @@ dependencies = [ "huggingface_hub>=0.22.0", "tqdm>=4.60.0", "rich>=10.0.0", - "datasets~=3.6.0", + "datasets~=3.0.2", "pillow>=9.5.0", "standardwebhooks>=1.0.0", "typer>=0.9.0", @@ -28,10 +25,7 @@ dependencies = [ "pandera[io]>=0.26.1, < 0.27.0", "pandas>=2.3.2", ] -nlp = [ - "textdescriptives", - "setfit ~= 0.7.0", -] +nlp = ["textdescriptives", "setfit ~= 0.7.0"] [build-system] requires = ["hatchling>=1.18.0"] @@ -48,15 +42,15 @@ line-length = 120 [tool.ruff.lint] select = [ - "F", # Pyflakes (undefined names, logical issues) - "E7", # Syntax/indentation errors - "E9", # Runtime-like errors - "E4", # Import-related errors (E401, E402, etc.) - "B012", # return in finally (can suppress real exceptions) - "B", # flake8-bugbear (broader than just B012) - "C4", # flake8-comprehensions - "I", # isort (import sorting) - "UP", # pyupgrade (modern Python syntax) + "F", # Pyflakes (undefined names, logical issues) + "E7", # Syntax/indentation errors + "E9", # Runtime-like errors + "E4", # Import-related errors (E401, E402, etc.) + "B012", # return in finally (can suppress real exceptions) + "B", # flake8-bugbear (broader than just B012) + "C4", # flake8-comprehensions + "I", # isort (import sorting) + "UP", # pyupgrade (modern Python syntax) "ASYNC", # flake8-async - async/await specific rules "PLE", # pylint errors (includes await-outside-async) "FAST", # FastAPI-specific rules (valuable for your backend) @@ -73,7 +67,7 @@ ignore = [ "RUF012", "B008", "FAST002", - "B023" + "B023", ] [tool.ruff.lint.per-file-ignores] diff --git a/extralit/uv.lock b/extralit/uv.lock index 7da0a2fb0..caa62ad76 100644 --- a/extralit/uv.lock +++ b/extralit/uv.lock @@ -1,11 +1,9 @@ version = 1 revision = 3 -requires-python = ">=3.9.2, <3.14" +requires-python = ">=3.11, <3.14" resolution-markers = [ "python_full_version >= '3.12'", - 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