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test_vrmetadata.py
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189 lines (132 loc) · 6.49 KB
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import unittest
import pathlib
import xmlrunner
from bagPy import *
import bagMetadataSamples, testUtils
# define constants used in multiple tests
datapath = str(pathlib.Path(__file__).parent.absolute()) + "/../examples/sample-data"
chunkSize = 100
compressionLevel = 6
print("Testing VRMetadata")
class TestVRMetadata(unittest.TestCase):
def testCreateOpen(self):
tmpBagFile = testUtils.RandomFileGuard("name")
# test create
metadata = Metadata()
self.assertIsNotNone(metadata)
metadata.loadFromBuffer(bagMetadataSamples.kMetadataXML)
dataset = Dataset.create(tmpBagFile.getName(), metadata,
chunkSize, compressionLevel)
self.assertIsNotNone(dataset)
dataset.createVR(chunkSize, compressionLevel, False)
# Check that the optional variable resolution metadata layer exists.
vrMetadata = dataset.getVRMetadata()
self.assertIsNotNone(vrMetadata)
vrMetadataDescriptor = vrMetadata.getDescriptor()
self.assertIsNotNone(vrMetadataDescriptor)
vrMetadata.writeAttributes()
# Set some new attribute values.
kExpectedMinDimX = 1
kExpectedMinDimY = 2
vrMetadataDescriptor.setMinDimensions(kExpectedMinDimX, kExpectedMinDimY)
kExpectedMaxDimX = 100
kExpectedMaxDimY = 200
vrMetadataDescriptor.setMaxDimensions(kExpectedMaxDimX, kExpectedMaxDimY)
kExpectedMinResX = 10.1
kExpectedMinResY = 20.2
vrMetadataDescriptor.setMinResolution(kExpectedMinResX, kExpectedMinResY)
kExpectedMaxResX = 111.1
kExpectedMaxResY = 222.2
vrMetadataDescriptor.setMaxResolution(kExpectedMaxResX, kExpectedMaxResY)
# Read the attributes back from memory.
minDimX, minDimY = vrMetadataDescriptor.getMinDimensions()
self.assertEqual(kExpectedMinDimX, minDimX)
self.assertEqual(kExpectedMinDimY, minDimY)
maxDimX, maxDimY = vrMetadataDescriptor.getMaxDimensions()
self.assertEqual(kExpectedMaxDimX, maxDimX)
self.assertEqual(kExpectedMaxDimY, maxDimY)
minResX, minResY = vrMetadataDescriptor.getMinResolution()
self.assertAlmostEqual(kExpectedMinResX, minResX, places=5)
self.assertAlmostEqual(kExpectedMinResY, minResY, places=5)
maxResX, maxResY = vrMetadataDescriptor.getMaxResolution()
self.assertAlmostEqual(kExpectedMaxResX, maxResX, places=5)
self.assertAlmostEqual(kExpectedMaxResY, maxResY, places=5)
# Save the new attributes.
vrMetadata.writeAttributes()
# Force a close
del dataset
# Test opening
dataset = Dataset.openDataset(tmpBagFile.getName(), BAG_OPEN_READONLY)
# Check that the optional variable resolution metadata layer exists.
vrMetadata = dataset.getVRMetadata()
self.assertIsNotNone(vrMetadata)
vrMetadataDescriptor = vrMetadata.getDescriptor()
# Read the attributes from the file.
minDimX, minDimY = vrMetadataDescriptor.getMinDimensions()
self.assertEqual(kExpectedMinDimX, minDimX)
self.assertEqual(kExpectedMinDimY, minDimY)
maxDimX, maxDimY = vrMetadataDescriptor.getMaxDimensions()
self.assertEqual(kExpectedMaxDimX, maxDimX)
self.assertEqual(kExpectedMaxDimY, maxDimY)
minResX, minResY = vrMetadataDescriptor.getMinResolution()
self.assertAlmostEqual(kExpectedMinResX, minResX, places=5)
self.assertAlmostEqual(kExpectedMinResY, minResY, places=5)
maxResX, maxResY = vrMetadataDescriptor.getMaxResolution()
self.assertAlmostEqual(kExpectedMaxResX, maxResX, places=5)
self.assertAlmostEqual(kExpectedMaxResY, maxResY, places=5)
# Force a close.
del dataset
def testWriteRead(self):
tmpBagFile = testUtils.RandomFileGuard("name")
# test create
metadata = Metadata()
self.assertIsNotNone(metadata)
metadata.loadFromBuffer(bagMetadataSamples.kMetadataXML)
dataset = Dataset.create(tmpBagFile.getName(), metadata, chunkSize, compressionLevel)
self.assertIsNotNone(dataset)
dataset.createVR(chunkSize, compressionLevel, False)
# Check that the optional variable resolution metadata layer exists.
vrMetadata = dataset.getVRMetadata()
self.assertIsNotNone(vrMetadata)
vrMetadataDescriptor = vrMetadata.getDescriptor()
self.assertIsNotNone(vrMetadataDescriptor)
# Write one record.
kExpectedItem0 = BagVRMetadataItem(0, 1, 2, 3.45, 6.789, 1001.01, 4004.004)
kRowStart = 0
kColumnStart = 0
kRowEnd = 0
kColumnEnd = 0
buffer = VRMetadataLayerItems((kExpectedItem0,))
vrMetadata.write(kRowStart, kColumnStart, kRowEnd, kColumnEnd, buffer)
# Force a close.
del vrMetadata
del dataset
# Re-open read-only
dataset = Dataset.openDataset(tmpBagFile.getName(), BAG_OPEN_READONLY)
vrMetadata = dataset.getVRMetadata()
# Read the record back.
buffer = vrMetadata.read(kRowStart, kColumnStart, kRowEnd, kColumnEnd)
self.assertIsNotNone(buffer)
result = buffer.asVRMetadataItems()
self.assertEqual(len(result), 1)
# Check the expected value of VRMetadataItem::index.
self.assertEqual(result[0].index, kExpectedItem0.index)
# Check the expected value of VRMetadataItem::dimensions_x.
self.assertEqual(result[0].dimensions_x, kExpectedItem0.dimensions_x)
# Check the expected value of VRMetadataItem::dimensions_y.
self.assertEqual(result[0].dimensions_y, kExpectedItem0.dimensions_y)
# Check the expected value of VRMetadataItem::resolution_x.
self.assertAlmostEqual(result[0].resolution_x, kExpectedItem0.resolution_x, places=5)
# Check the expected value of VRMetadataItem::resolution_y.
self.assertAlmostEqual(result[0].resolution_y, kExpectedItem0.resolution_y, places=5)
# Check the expected value of VRMetadataItem::sw_corner_x.".
self.assertAlmostEqual(result[0].sw_corner_x, kExpectedItem0.sw_corner_x, places=5)
# Check the expected value of VRMetadataItem::sw_corner_y."
self.assertAlmostEqual(result[0].sw_corner_y, kExpectedItem0.sw_corner_y, places=5)
# Force a close.
del dataset
if __name__ == '__main__':
unittest.main(
testRunner=xmlrunner.XMLTestRunner(output='test-reports'),
failfast=False, buffer=False, catchbreak=False
)