From 87360d8158bd08c73889cb48b6ef2e70a9210431 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 23 Mar 2026 20:07:43 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v5.0.0...v6.0.0)
- [github.com/astral-sh/ruff-pre-commit: v0.9.6 → v0.15.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.6...v0.15.7)
- [github.com/rbubley/mirrors-prettier: v3.5.1 → v3.8.1](https://github.com/rbubley/mirrors-prettier/compare/v3.5.1...v3.8.1)
---
 .pre-commit-config.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e526c254..98e0cef0 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
@@ -11,7 +11,7 @@ repos:
         types: [text]
         files: \.(json|ipynb)$
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.6
+    rev: v0.15.7
     hooks:
       - id: ruff
         args: [--fix, --show-fixes]
@@ -22,6 +22,6 @@ repos:
       - id: ruff-format
         types_or: [python, jupyter]
   - repo: https://github.com/rbubley/mirrors-prettier # Update mirror as official mirror is deprecated
-    rev: v3.5.1
+    rev: v3.8.1
     hooks:
       - id: prettier

From 06c4877e4e0ab91766c79966952b76116b909fd6 Mon Sep 17 00:00:00 2001
From: Vecko <36369090+VeckoTheGecko@users.noreply.github.com>
Date: Fri, 27 Mar 2026 13:22:20 +0100
Subject: [PATCH 2/2] Fix errors

---
 docs/paper/plotting_functions.py | 2 +-
 src/virtualship/cli/_plan.py     | 6 ++++--
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/docs/paper/plotting_functions.py b/docs/paper/plotting_functions.py
index a11ea798..06009123 100644
--- a/docs/paper/plotting_functions.py
+++ b/docs/paper/plotting_functions.py
@@ -109,7 +109,7 @@ def plot_ctd(ds, ax, plot_variable, vmin, vmax, axes_labels=False):
     var_down = _ctd_descent_only(ctd_distance, MAP_VARNAMES[plot_variable])
 
     # 1d array of depth dimension (from deepest trajectory)
-    traj_idx, obs_idx = np.where(z_down == np.nanmin(z_down))
+    traj_idx, _ = np.where(z_down == np.nanmin(z_down))
     z1d = z_down.values[traj_idx[0], :]
 
     # distance as 1d array
diff --git a/src/virtualship/cli/_plan.py b/src/virtualship/cli/_plan.py
index 97dbc7d2..618906a3 100644
--- a/src/virtualship/cli/_plan.py
+++ b/src/virtualship/cli/_plan.py
@@ -1055,8 +1055,10 @@ def save_pressed(self) -> None:
             self.sync_ui_waypoints()  # call to ensure waypoint inputs are synced
 
             # verify schedule
-            wp_lats, wp_lons = _get_waypoint_latlons(
-                expedition_editor.expedition.schedule.waypoints
+            _wp_lats, _wp_lons = (
+                _get_waypoint_latlons(  # TODO: Remove these since they aren't used?
+                    expedition_editor.expedition.schedule.waypoints
+                )
             )
             instruments_config = expedition_editor.expedition.instruments_config