From e47726f563edba4a3744e70f0b8d40ada1ebca42 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]" <github-actions[bot]@users.noreply.github.com>
Date: Tue, 24 Mar 2026 09:21:21 +0000
Subject: [PATCH] docs: Weekly AI README upgrade (2026-03-24)

---
 README.md | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/README.md b/README.md
index ab52e09..29025f6 100644
--- a/README.md
+++ b/README.md
@@ -127,6 +127,28 @@ server <- function(input, output, session) {
 shinyApp(ui, server)
 ```
 
+### Filter Subnetwork by Context
+
+Filter a subnetwork based on contextual relevance using `filterSubnetworkByContext`.
+
+```r
+# Example nodes and edges
+nodes <- data.frame(id = c("A", "B", "C"))
+edges <- data.frame(
+  source = c("A", "B"),
+  target = c("B", "C"),
+  interaction = c("Activation", "Inhibition"),
+  stringsAsFactors = FALSE
+)
+
+# Define a query and filter the subnetwork
+query <- c("DNA damage", "repair")
+filtered_network <- filterSubnetworkByContext(nodes, edges, query, method = "tag_count", cutoff = 1)
+
+print(filtered_network$nodes)
+print(filtered_network$edges)
+```
+
 ## License
 This package is distributed under the [Artistic-2.0](https://opensource.org/licenses/Artistic-2.0) license. However, its dependencies may have different licenses.