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Add information to AcquisitionData to allow discovery of the correct microscope #757

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Merged
d-j-hatton merged 2 commits into from
Mar 12, 2026
Merged

Add information to AcquisitionData to allow discovery of the correct microscope #757

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617687e
add information to AcquisitionData to allow the microscope to be disc…
d-j-hatton Mar 12, 2026
b093976
model dump needs to happen with mode json so that datatime object is …
d-j-hatton Mar 12, 2026
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13 changes: 10 additions & 3 deletions src/murfey/server/api/instrument.py
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Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@

try:
from smartem_backend.api_client import EntityConverter
from smartem_common.schemas import AcquisitionData
from smartem_common.schemas import AcquisitionData, MicroscopeData

SMARTEM_ACTIVE = True
except ImportError:
Expand Down Expand Up @@ -160,12 +160,19 @@ async def setup_multigrid_watcher(
if SMARTEM_ACTIVE and machine_config.smartem_api_url:
log.info("registering an acquisition with smartem")
try:
microscope_data = MicroscopeData(instrument_id=instrument_name)
acquisition_data = EntityConverter.acquisition_to_request(
AcquisitionData(name=visit)
AcquisitionData(
name=visit,
id=visit,
instrument=microscope_data,
storage_path=str(secure_path(watcher_spec.source / visit)),
start_time=datetime.datetime.now(),
)
)
async with clientsession.post(
f"{machine_config.smartem_api_url}/acquisitions",
json=acquisition_data.model_dump(),
json=acquisition_data.model_dump(mode="json"),
) as response:
acquisition_response_data = await response.json()
acquisition_uuid = acquisition_response_data["uuid"]
Expand Down
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