QoL Batch

[TheJeran]

This is a quality of life update to address some of the ideas in #593

I will let Gemini summarize as there are a lot of minor changes

[gemini-code-assist]

Code Review

This pull request introduces several enhancements to the visualization tool, including a new 'Value Cropping' feature implemented via shader thresholds, a 'Disable Scaling' option for point clouds, and a global visualization reset function. UI improvements include reorganizing settings for better accessibility, adding close buttons to panels, and updating the navbar and transect selection logic for flat mode. Feedback focuses on ensuring state consistency by adding missing setters for new variables, handling potential 'undefined' values when passing uniforms to shaders, and correcting CSS positioning for the new reset icon.