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Upgrades commons libraries to fix security vulnerabilities #219

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aa216eb
Upgrades commons libraries
NicoPiel Dec 5, 2025
c597357
Updates commons libraries to newer versions (donkey/cli)
NicoPiel Dec 6, 2025
8f70da4
Re-added beanutils to CLI
NicoPiel Dec 6, 2025
7555727
Bump versions
NicoPiel Feb 17, 2026
e66b438
Get rid of manager leftovers
NicoPiel Mar 13, 2026
cd62eab
Bump remaining versions
NicoPiel Mar 13, 2026
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16 changes: 8 additions & 8 deletions client/.classpath
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Expand Up @@ -120,9 +120,9 @@
</classpathentry>
<classpathentry kind="lib" path="lib/wizard.jar"/>
<classpathentry kind="lib" path="lib/xpp3-1.1.4c.jar"/>
<classpathentry kind="lib" path="lib/commons-logging-1.2.jar"/>
<classpathentry kind="lib" path="lib/commons-logging-1.3.5.jar"/>
<classpathentry kind="lib" path="lib/looks-2.3.1.jar"/>
<classpathentry kind="lib" path="lib/commons-io-2.13.0.jar"/>
<classpathentry kind="lib" path="lib/commons-io-2.21.0.jar"/>
<classpathentry kind="lib" path="lib/commons-lang3-3.20.0.jar">
<attributes>
<attribute name="javadoc_location" value="http://commons.apache.org/lang/api/"/>
Expand All @@ -140,11 +140,11 @@
<classpathentry kind="lib" path="/Server/setup/client-lib/userutil-sources.jar"/>
<classpathentry kind="lib" path="lib/miglayout-swing-4.2.jar"/>
<classpathentry kind="lib" path="lib/miglayout-core-4.2.jar"/>
<classpathentry kind="lib" path="lib/commons-beanutils-1.9.4.jar"/>
<classpathentry kind="lib" path="lib/commons-beanutils-1.11.0.jar"/>
<classpathentry kind="lib" path="lib/velocity-engine-core-2.3.jar"/>
<classpathentry kind="lib" path="lib/velocity-tools-generic-3.1.jar"/>
<classpathentry kind="lib" path="lib/commons-configuration2-2.8.0.jar"/>
<classpathentry kind="lib" path="lib/javax.mail-1.5.0.jar"/>
<classpathentry kind="lib" path="lib/commons-configuration2-2.13.0.jar"/>
<classpathentry kind="lib" path="lib/javax.mail-1.5.6.jar"/>
<classpathentry kind="lib" path="lib/rsyntaxtextarea-2.5.6.jar"/>
<classpathentry kind="lib" path="lib/autocomplete-2.5.4.jar"/>
<classpathentry kind="lib" path="lib/language_support.jar"/>
Expand Down Expand Up @@ -175,14 +175,14 @@
<classpathentry kind="lib" path="lib/commons-vfs2-2.10.0.jar"/>
<classpathentry kind="lib" path="lib/staxon-1.3.jar"/>
<classpathentry kind="lib" path="lib/jetty-util-9.4.57.v20241219.jar"/>
<classpathentry kind="lib" path="lib/commons-compress-1.24.0.jar"/>
<classpathentry kind="lib" path="lib/javax.activation-1.2.0.jar"/>
<classpathentry kind="lib" path="lib/commons-compress-1.28.0.jar"/>
<classpathentry kind="lib" path="lib/activation-1.1.jar"/>
<classpathentry kind="lib" path="lib/javax.activation-api-1.2.0.jar"/>
<classpathentry kind="lib" path="lib/javax.annotation-api-1.3.2.jar"/>
<classpathentry kind="lib" path="lib/openjfx.jar"/>
<classpathentry kind="lib" path="lib/jaxb-api-2.4.0-b180725.0427.jar"/>
<classpathentry kind="lib" path="lib/jaxb-runtime-2.4.0-b180725.0644.jar"/>
<classpathentry kind="lib" path="lib/commons-codec-1.16.0.jar"/>
<classpathentry kind="lib" path="lib/commons-codec-1.21.0.jar"/>
<classpathentry kind="lib" path="lib/httpcore-4.4.13.jar"/>
<classpathentry kind="lib" path="lib/swagger-annotations-2.0.10.jar"/>
<classpathentry kind="lib" path="lib/jcifs-ng-2.1.10.jar"/>
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@tonygermano tonygermano Dec 12, 2025

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Here is the changelog for commons-beanutils https://commons.apache.org/proper/commons-beanutils/changes.html

I don't see anything concerning there.

In the pom it has dependencies on

  • commons-logging 1.3.5 (we are currently on 1.2)
  • commons-collections 3.2.2 (we are good on this one.)

This is the changelog for commons-logging https://commons.apache.org/proper/commons-logging/changes.html

commons-logging has a dependency on log4j 2.24.3 (we are on 2.17.2)

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8 changes: 4 additions & 4 deletions command/.classpath
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Expand Up @@ -49,7 +49,7 @@
</attributes>
</classpathentry>
<classpathentry kind="lib" path="lib/commons-lang3-3.20.0.jar"/>
<classpathentry kind="lib" path="lib/commons-logging-1.2.jar">
<classpathentry kind="lib" path="lib/commons-logging-1.3.5.jar">
<attributes>
<attribute name="javadoc_location" value="http://commons.apache.org/logging/apidocs/"/>
</attributes>
Expand All @@ -70,18 +70,18 @@
</attributes>
</classpathentry>
<classpathentry kind="lib" path="lib/xpp3-1.1.4c.jar"/>
<classpathentry kind="lib" path="lib/commons-io-2.13.0.jar"/>
<classpathentry kind="lib" path="lib/commons-io-2.21.0.jar"/>
<classpathentry kind="lib" path="lib/commons-collections4-4.4.jar"/>
<classpathentry kind="lib" path="lib/velocity-engine-core-2.3.jar"/>
<classpathentry kind="lib" path="lib/velocity-tools-generic-3.1.jar"/>
<classpathentry kind="lib" path="lib/commons-configuration2-2.8.0.jar"/>
<classpathentry kind="lib" path="lib/commons-configuration2-2.13.0.jar"/>
<classpathentry kind="lib" path="lib/bcpkix-jdk18on-1.78.1.jar"/>
<classpathentry kind="lib" path="lib/bcprov-jdk18on-1.78.1.jar"/>
<classpathentry kind="lib" path="lib/bcutil-jdk18on-1.78.1.jar"/>
<classpathentry kind="lib" path="lib/commons-vfs2-2.10.0.jar"/>
<classpathentry kind="lib" path="lib/jetty-util-9.4.57.v20241219.jar"/>
<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
<classpathentry kind="lib" path="lib/commons-codec-1.16.0.jar"/>
<classpathentry kind="lib" path="lib/commons-codec-1.21.0.jar"/>
<classpathentry kind="lib" path="lib/httpcore-4.4.13.jar"/>
<classpathentry kind="lib" path="lib/httpclient-4.5.13.jar"/>
<classpathentry kind="lib" path="lib/httpmime-4.5.13.jar"/>
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Expand Up @@ -59,7 +59,7 @@

<manifest>
<attribute name="Main-Class" value="com.mirth.connect.cli.launcher.CommandLineLauncher" />
<attribute name="Class-Path" value="cli-lib/log4j-api-2.17.2.jar cli-lib/log4j-core-2.17.2.jar cli-lib/commons-io-2.13.0.jar conf/" />
<attribute name="Class-Path" value="cli-lib/log4j-api-2.17.2.jar cli-lib/log4j-core-2.17.2.jar cli-lib/commons-io-2.21.0.jar conf/" />
</manifest>
</jar>
</target>
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8 changes: 4 additions & 4 deletions donkey/.classpath
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Expand Up @@ -11,7 +11,7 @@
<attribute name="javadoc_location" value="http://commons.apache.org/dbutils/apidocs/"/>
</attributes>
</classpathentry>
<classpathentry kind="lib" path="lib/commons/commons-io-2.13.0.jar">
<classpathentry kind="lib" path="lib/commons/commons-io-2.21.0.jar">
<attributes>
<attribute name="javadoc_location" value="http://commons.apache.org/io/api-release/"/>
</attributes>
Expand All @@ -23,7 +23,7 @@
<attribute name="javadoc_location" value="http://commons.apache.org/proper/commons-collections/apidocs/"/>
</attributes>
</classpathentry>
<classpathentry kind="lib" path="lib/commons/commons-logging-1.2.jar">
<classpathentry kind="lib" path="lib/commons/commons-logging-1.3.5.jar">
<attributes>
<attribute name="javadoc_location" value="http://commons.apache.org/logging/apidocs/"/>
</attributes>
Expand Down Expand Up @@ -53,7 +53,7 @@
<classpathentry kind="lib" path="lib/database/derby-10.10.2.0.jar"/>
<classpathentry kind="lib" path="lib/xstream/xpp3-1.1.4c.jar"/>
<classpathentry kind="lib" path="lib/database/ojdbc8-12.2.0.1.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-beanutils-1.9.4.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-beanutils-1.11.0.jar"/>
<classpathentry kind="lib" path="lib/database/jtds-1.3.1.jar"/>
<classpathentry kind="lib" path="lib/database/mysql-connector-j-8.4.0.jar"/>
<classpathentry kind="lib" path="lib/HikariCP-2.5.1.jar"/>
Expand All @@ -67,7 +67,7 @@
<classpathentry kind="lib" path="testlib/javax.inject-2.4.0-b31.jar"/>
<classpathentry kind="lib" path="testlib/aopalliance-repackaged-2.4.0-b31.jar"/>
<classpathentry kind="lib" path="lib/guice-4.1.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-codec-1.16.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-codec-1.21.0.jar"/>
<classpathentry kind="lib" path="lib/guava/checker-qual-2.10.0.jar"/>
<classpathentry kind="lib" path="lib/guava/error_prone_annotations-2.3.4.jar"/>
<classpathentry kind="lib" path="lib/guava/failureaccess-1.0.1.jar"/>
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2 changes: 1 addition & 1 deletion generator/.classpath
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Expand Up @@ -22,7 +22,7 @@
</attributes>
</classpathentry>
<classpathentry kind="lib" path="lib/commons-lang3-3.20.0.jar"/>
<classpathentry kind="lib" path="lib/commons-io-2.13.0.jar"/>
<classpathentry kind="lib" path="lib/commons-io-2.21.0.jar"/>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
<classpathentry kind="output" path="bin"/>
</classpath>
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Expand Up @@ -12,19 +12,19 @@
<classpathentry kind="lib" path="lib/extensions/file/jcifs-ng-2.1.10.jar"/>
<classpathentry kind="lib" path="lib/extensions/doc/itext-2.1.7.jar"/>
<classpathentry kind="lib" path="lib/extensions/doc/itext-rtf-2.1.7.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-beanutils-1.9.4.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-beanutils-1.11.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-cli-1.2.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-configuration2-2.8.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-configuration2-2.13.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-dbcp2-2.0.1.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-dbutils-1.7.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-digester3-3.2.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-jxpath-1.3.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-logging-1.2.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-logging-1.3.5.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-net-3.9.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-pool2-2.3.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-el-1.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-httpclient-3.0.1.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-email-1.6.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-email-1.5.jar"/>
<classpathentry kind="lib" path="lib/not-going-to-be-commons-ssl-0.3.18.jar"/>
<classpathentry kind="lib" path="lib/velocity-engine-core-2.3.jar"/>
<classpathentry kind="lib" path="lib/velocity-tools-generic-3.1.jar">
Expand All @@ -47,7 +47,7 @@
<classpathentry kind="lib" path="lib/extensions/dimse/dcm4che-tool-dcmsnd-2.0.29.jar"/>
<classpathentry kind="lib" path="lib/mybatis-3.1.1.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-lang3-3.20.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-io-2.13.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-io-2.21.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-math3-3.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-text-1.15.0.jar"/>
<classpathentry kind="lib" path="lib/log4j/log4j-1.2-api-2.17.2.jar">
Expand Down Expand Up @@ -112,7 +112,7 @@
<classpathentry kind="lib" path="lib/javax/javax.inject-2.4.0-b31.jar"/>
<classpathentry kind="lib" path="lib/javax/javax.json-1.0.4.jar"/>
<classpathentry kind="lib" path="lib/javax/javax.json-api-1.0.jar"/>
<classpathentry kind="lib" path="lib/javax/javax.mail-1.5.0.jar"/>
<classpathentry kind="lib" path="lib/javax/javax.mail-1.5.6.jar"/>
<classpathentry kind="lib" path="lib/javax/javax.ws.rs-api-2.0.1.jar"/>
<classpathentry kind="lib" path="lib/jetty/jetty-annotations-9.4.57.v20241219.jar"/>
<classpathentry kind="lib" path="lib/jetty/jetty-continuation-9.4.57.v20241219.jar"/>
Expand Down Expand Up @@ -172,7 +172,7 @@
<classpathentry kind="lib" path="lib/javax/jaxws/jaxws-api-2.3.0.jar"/>
<classpathentry kind="lib" path="lib/javax/jaxws/jaxws-rt-2.3.0.2.jar"/>
<classpathentry kind="lib" path="lib/javax/jaxws/jaxws-tools-2.3.0.2.jar"/>
<classpathentry kind="lib" path="lib/javax/javax.activation-1.2.0.jar"/>
<classpathentry kind="lib" path="lib/javax/activation-1.1.jar"/>
<classpathentry kind="lib" path="lib/javax/javax.activation-api-1.2.0.jar"/>
<classpathentry kind="lib" path="lib/javax/javax.annotation-api-1.3.2.jar"/>
<classpathentry combineaccessrules="false" kind="src" path="/Donkey">
Expand Down Expand Up @@ -201,8 +201,8 @@
<attribute name="javadoc_location" value="http://commons.apache.org/proper/commons-vfs/apidocs"/>
</attributes>
</classpathentry>
<classpathentry kind="lib" path="lib/commons/commons-compress-1.24.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-codec-1.16.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-compress-1.28.0.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-codec-1.21.0.jar"/>
<classpathentry kind="lib" path="lib/commons/httpcore-4.4.13.jar"/>
<classpathentry kind="lib" path="lib/database/mssql-jdbc-8.4.1.jre8.jar"/>
<classpathentry kind="lib" path="lib/aws/annotations-2.15.28.jar"/>
Expand Down Expand Up @@ -267,7 +267,7 @@
<classpathentry kind="lib" path="lib/hapi/hapi-structures-v28-2.3.jar"/>
<classpathentry kind="lib" path="lib/hapi/hapi-structures-v281-2.3.jar"/>
<classpathentry kind="lib" path="lib/rhino-1.7.13.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-fileupload-1.5.jar"/>
<classpathentry kind="lib" path="lib/commons/commons-fileupload-1.6.0.jar"/>
<classpathentry kind="lib" path="lib/xstream-1.4.20.jar"/>
<classpathentry kind="output" path="bin"/>
</classpath>
4 changes: 2 additions & 2 deletions server/build.xml
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<manifest>
<attribute name="Main-Class" value="com.mirth.connect.server.launcher.MirthLauncher" />
<attribute name="Class-Path" value="server-lib/commons/commons-io-2.13.0.jar server-lib/commons/commons-configuration2-2.8.0.jar server-lib/commons/commons-lang3-3.20.0.jar server-lib/commons/commons-logging-1.2.jar server-lib/commons/commons-beanutils-1.9.4.jar server-lib/commons/commons-text-1.15.0.jar server-lib/commons/commons-collections-3.2.2.jar conf/" />
<attribute name="Class-Path" value="server-lib/commons/commons-io-2.21.0.jar server-lib/commons/commons-configuration2-2.13.0.jar server-lib/commons/commons-lang3-3.20.0.jar server-lib/commons/commons-logging-1.3.5.jar server-lib/commons/commons-beanutils-1.11.0.jar server-lib/commons/commons-text-1.15.0.jar server-lib/commons/commons-collections-3.2.2.jar conf/" />
</manifest>
</jar>

Expand Down Expand Up @@ -1232,7 +1232,7 @@
<include name="log4j/log4j-core-2.17.2.jar" />
<include name="database/derby-10.10.2.0.jar" />
<include name="database/derbytools-10.10.2.0.jar" />
<include name="commons/commons-io-2.13.0.jar" />
<include name="commons/commons-io-2.21.0.jar" />
</fileset>
</classpath>
<arg value="dbconf/derby/derby-database.sql" />
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