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docs: Add documentation, new functions, and dependency/CI updates#13

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dillard064 wants to merge 8 commits intomasterfrom
dev
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docs: Add documentation, new functions, and dependency/CI updates#13
dillard064 wants to merge 8 commits intomasterfrom
dev

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@dillard064
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Summary

This PR merges the dev branch into master, bringing in a significant round of documentation, new functions, dependency updates, and CI improvements.

Changes

New Functions

  • Added prune() with full documentation
  • Added fastIC() with full documentation
  • Added wald.test() export

Documentation (#5)

  • Added documentation for associate(), clones(), compare(), wald.test.asreml(), and wald.test()
  • Added documentation for herit.asreml(), hsd(), randomRegress(), and fixedRegress()
  • Updated documentation for themes, pad.data(), outliers, manhattan(), and fastIC()

Dependency Updates

  • Added ASExtras4 as a Suggests dependency
  • Updated RoxygenNote to 7.3.3

CI / GitHub Actions

  • Updated GitHub Actions to modern versions: checkout@v4, setup-r@v2, setup-pandoc@v2, cache@v4, upload-artifact@v4

Code Improvements

  • Updated functions to use scripts consistent with master files
  • General code and documentation cleanup across multiple R files

@rogerssam rogerssam self-requested a review March 16, 2026 23:42
@rogerssam
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Need to find some more data sets for test cases

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@dillard064 I think we want to move this out of this package, possibly to a new package

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@dillard064 Similarly, I think this needs to go somewhere else

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This should be moved to a different package

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If these functions have all been moved/updated elsewhere then this file can be deleted

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2 participants